STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bbip1BBSome-interacting protein 1. (83 aa)    
Predicted Functional Partners:
BBS1
Bardet-Biedl syndrome 1 protein.
    
 0.891
BBS9
Protein PTHB1.
    
 0.836
Bbs7
Bardet-Biedl syndrome 7-like protein.
    
 
 0.763
Bbs2
Inhibitor of growth protein.
    
 0.733
T11_7249
Kinesin-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Kinesin family.
    
 
 0.648
KDM6A
Lysine-specific demethylase 6A.
    
 
 0.486
T11_4263
Uncharacterized protein.
    
 
 0.486
Tmtc4
Transmembrane and TPR repeat-containing protein 4.
    
 
 0.486
VWA9
Von Willebrand factor A domain-containing protein 9.
    
 
 0.486
Your Current Organism:
Trichinella zimbabwensis
NCBI taxonomy Id: 268475
Other names: T. zimbabwensis, Trichinella zimbabwensis Pozio, Foggin, Marucci, La-Rosa, Sacchi, Corona, Rossi & Mukaratirwa, 2002
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.