STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RTN3Reticulon-like protein. (734 aa)    
Predicted Functional Partners:
Sec63
Translocation protein SEC63-like protein.
    
 
 0.645
Rho1
Ras-like GTP-binding protein Rho1.
    
 0.611
T11_3683
Pepsin II-1; Belongs to the peptidase A1 family.
    
 0.610
ctse-a
Cathepsin E-A; Belongs to the peptidase A1 family.
    
 0.610
T11_2847
Lysosomal aspartic protease; Belongs to the peptidase A1 family.
    
 0.610
Arhgdia
Rho GDP-dissociation inhibitor 1.
     
 0.523
Lnp
Protein lunapark.
    
 
 0.501
REEP5-9
Receptor expression-enhancing protein.
   
 
 0.499
Tmem33
Transmembrane protein 33.
    
 
 0.492
Rac1
Ras-related C3 botulinum toxin substrate 1.
    
 0.467
Your Current Organism:
Trichinella zimbabwensis
NCBI taxonomy Id: 268475
Other names: T. zimbabwensis, Trichinella zimbabwensis Pozio, Foggin, Marucci, La-Rosa, Sacchi, Corona, Rossi & Mukaratirwa, 2002
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.