STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tir-1Sterile alpha and TIR motif-containing protein tir-1. (1281 aa)    
Predicted Functional Partners:
Slit2
Slit-like protein 2 protein; Belongs to the Toll-like receptor family.
     
 0.666
TMED7
Transmembrane emp24 domain-containing protein 7.
    
 0.650
NMNAT1
Nicotinamide mononucleotide adenylyltransferase 1.
    
 
 0.582
PDZD4
PDZ domain-containing protein 4.
   
 0.513
MAP3K15
Mitogen-activated protein kinase kinase kinase 15.
      
 0.509
CaMKII
Calcium/calmodulin-dependent protein kinase type II alpha chain.
    
 
 0.498
MAP2K6
Dual specificity mitogen-activated protein kinase kinase 6; Belongs to the protein kinase superfamily.
      
 0.493
MAPK1
Mitogen-activated protein kinase; Belongs to the protein kinase superfamily. Ser/Thr protein kinase family. MAP kinase subfamily.
      
 0.475
CASK
Peripheral plasma membrane protein CASK.
    
 
 0.417
Your Current Organism:
Trichinella zimbabwensis
NCBI taxonomy Id: 268475
Other names: T. zimbabwensis, Trichinella zimbabwensis Pozio, Foggin, Marucci, La-Rosa, Sacchi, Corona, Rossi & Mukaratirwa, 2002
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