STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
FBXO9F-box only protein 9. (675 aa)    
Predicted Functional Partners:
colgalt1
Cullin-1; Belongs to the cullin family.
    
 0.876
Cul3
Cullin-3; Belongs to the ligand-gated ion channel (TC 1.A.9) family.
    
 0.860
sconC
E3 ubiquitin ligase complex SCF subunit sconC; Belongs to the SKP1 family.
    
 0.803
skp1-2
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
    
 0.803
skp1-3
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
    
 0.803
scon-3
E3 ubiquitin ligase complex SCF subunit scon-3; Belongs to the SKP1 family.
    
 0.803
Skp1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
    
 0.803
Roc1a
RING-box protein 1A.
    
 0.700
ned-8
Nedd8.
    
 0.697
UBE2F
Nedd8-conjugating enzyme UBE2F; Belongs to the ubiquitin-conjugating enzyme family.
     
 0.653
Your Current Organism:
Trichinella zimbabwensis
NCBI taxonomy Id: 268475
Other names: T. zimbabwensis, Trichinella zimbabwensis Pozio, Foggin, Marucci, La-Rosa, Sacchi, Corona, Rossi & Mukaratirwa, 2002
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.