STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
POT1Protection of telomeres protein 1. (332 aa)    
Predicted Functional Partners:
gar1
H/ACA ribonucleoprotein complex subunit; Required for ribosome biogenesis. Part of a complex which catalyzes pseudouridylation of rRNA. This involves the isomerization of uridine such that the ribose is subsequently attached to C5, instead of the normal N1. Pseudouridine ("psi") residues may serve to stabilize the conformation of rRNAs.
     
 0.806
nop10
H/ACA ribonucleoprotein complex subunit 3.
     
 0.777
CBF5
H/ACA ribonucleoprotein complex subunit 4.
   
 
 0.722
T11_14168
Putative H/ACA ribonucleoprotein complex subunit 2-like protein.
     
 0.720
Rfc3
Replication factor C subunit 3.
     
 0.688
POLA1
DNA polymerase.
   
 
 0.663
him-6
Bloom syndrome-like protein.
    
 0.650
INO80
DNA helicase INO80.
    
 0.650
RFC2
Replication factor C subunit 2.
     
 0.642
Rfc4
Replication factor C subunit 4.
     
 0.642
Your Current Organism:
Trichinella zimbabwensis
NCBI taxonomy Id: 268475
Other names: T. zimbabwensis, Trichinella zimbabwensis Pozio, Foggin, Marucci, La-Rosa, Sacchi, Corona, Rossi & Mukaratirwa, 2002
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.