STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rbm39RNA-binding protein 39. (591 aa)    
Predicted Functional Partners:
CDC5L
Cell division cycle 5-like protein.
   
 
 0.989
JKAMP
RNA-binding protein 25.
   
 0.911
U2af50
U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.
   
 
0.831
LUC7L3
Luc7-like protein 3.
   
 0.821
SF3B1
Splicing factor 3B subunit 1.
   
 
 0.798
T11_16562
DEAD-box ATP-dependent RNA helicase 20.
   
 0.784
SRRM1
Serine/arginine repetitive matrix protein 1.
   
 0.778
RBM5
RNA-binding protein 5.
   
 0.769
SF1
Splicing factor 1.
   
 0.756
E01A2.2
Serrate RNA effector molecule-like protein.
   
 0.745
Your Current Organism:
Trichinella zimbabwensis
NCBI taxonomy Id: 268475
Other names: T. zimbabwensis, Trichinella zimbabwensis Pozio, Foggin, Marucci, La-Rosa, Sacchi, Corona, Rossi & Mukaratirwa, 2002
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.