STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rbbp6E3 ubiquitin-protein ligase RBBP6. (1397 aa)    
Predicted Functional Partners:
CPSF3
Cleavage and polyadenylation specificity factor subunit 3.
    
 0.999
osm1
Cleavage and polyadenylation specificity factor subunit 2.
    
 0.999
CPSF1
Cleavage and polyadenylation specificity factor subunit 1.
    
 0.999
WDR33
Pre-mRNA 3' end processing protein WDR33.
   
 0.999
CPSF4
Cleavage and polyadenylation specificity factor subunit 4.
    
 0.999
Fip1l1
Pre-mRNA 3'-end-processing factor FIP1.
    
 0.997
Prdm13
Poly(A) polymerase; Polymerase that creates the 3'-poly(A) tail of mRNA's.
    
 
 0.990
trip12
E3 ubiquitin-protein ligase TRIP12.
   
 
  0.977
ssu72
RNA polymerase II subunit A C-terminal domain phosphatase SSU72.
    
 0.964
ssu72-2
RNA polymerase II subunit A C-terminal domain phosphatase SSU72.
    
 0.964
Your Current Organism:
Trichinella zimbabwensis
NCBI taxonomy Id: 268475
Other names: T. zimbabwensis, Trichinella zimbabwensis Pozio, Foggin, Marucci, La-Rosa, Sacchi, Corona, Rossi & Mukaratirwa, 2002
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.