STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Foxn4Forkhead box protein N4. (443 aa)    
Predicted Functional Partners:
T11_9789
Putative sulfite oxidase, mitochondrial.
     
 0.810
lrk-1
Leucine-rich repeat serine/threonine-protein kinase 1.
    
 0.666
CHD3
Chromodomain-helicase-DNA-binding protein 3.
   
 0.658
SIRT1
NAD-dependent protein deacetylase sirtuin-1.
    
 0.641
GATA3
GATA-binding factor 3.
  
 
 0.629
ftt-2
14-3-3-like protein 2; Belongs to the 14-3-3 family.
   
 0.626
Sirt3
NAD-dependent protein deacetylase sirtuin-3, mitochondrial.
    
 0.576
Hcfc1
Host cell factor 1.
    
 0.562
CREBBP
CREB-binding protein.
    
 0.559
EP300
Histone acetyltransferase.
    
 0.559
Your Current Organism:
Trichinella zimbabwensis
NCBI taxonomy Id: 268475
Other names: T. zimbabwensis, Trichinella zimbabwensis Pozio, Foggin, Marucci, La-Rosa, Sacchi, Corona, Rossi & Mukaratirwa, 2002
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.