STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SMC1AStructural maintenance of chromosomes protein 1A. (1797 aa)    
Predicted Functional Partners:
smc3
Structural maintenance of chromosomes protein 3; Belongs to the complex I 49 kDa subunit family.
   
0.999
Nipbl
Nipped-B protein.
   
 0.999
REC8
Meiotic recombination protein REC8-like protein.
   
 0.999
Pds5b
Sister chromatid cohesion protein PDS5-like protein B.
   
 0.995
plk1
Serine/threonine-protein kinase PLK.
   
 0.994
T11_15902
Serine/threonine-protein kinase PLK4.
   
 0.959
ESPL1
Separin.
   
 0.942
T11_9365
Uncharacterized protein.
   
 0.914
Ncapd2
Condensin complex subunit 1.
   
 0.913
Ncaph
Condensin complex subunit 2.
   
 0.898
Your Current Organism:
Trichinella zimbabwensis
NCBI taxonomy Id: 268475
Other names: T. zimbabwensis, Trichinella zimbabwensis Pozio, Foggin, Marucci, La-Rosa, Sacchi, Corona, Rossi & Mukaratirwa, 2002
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.