STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cct-8T-complex protein 1 subunit theta. (1546 aa)    
Predicted Functional Partners:
Ltv1
Protein LTV1-like protein.
   
 0.999
Riok2
Serine/threonine-protein kinase RIO2.
   
 0.999
Gcc1
GRIP and coiled-coil domain-containing protein 1.
   
 0.998
rps6
40S ribosomal protein S6.
    
  0.998
DIMT1
rRNA adenine N(6)-methyltransferase; Belongs to the class I-like SAM-binding methyltransferase superfamily. rRNA adenine N(6)-methyltransferase family.
   
 
 0.997
RRP12
RRP12-like protein.
   
 
 0.997
rps3-a
40S ribosomal protein S3-A.
    
 0.992
Wbscr22
Putative methyltransferase-like protein.
   
 0.991
CSNK1E
Casein kinase I isoform epsilon; Belongs to the protein kinase superfamily.
    
 0.991
RPS15
40S ribosomal protein S15; Belongs to the universal ribosomal protein uS19 family.
    
 0.990
Your Current Organism:
Trichinella zimbabwensis
NCBI taxonomy Id: 268475
Other names: T. zimbabwensis, Trichinella zimbabwensis Pozio, Foggin, Marucci, La-Rosa, Sacchi, Corona, Rossi & Mukaratirwa, 2002
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