STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
HOOK1Protein Hook-like protein 1. (329 aa)    
Predicted Functional Partners:
lrk-1
Leucine-rich repeat serine/threonine-protein kinase 1.
    
 0.798
T11_10292
Uncharacterized protein.
    
 
 0.629
MCM4
DNA helicase; Belongs to the MCM family.
   
 
 0.590
DHFR
Dihydrofolate reductase.
    
 
 0.544
Egfr
Receptor protein-tyrosine kinase.
    
 0.531
prkdc
DNA-dependent protein kinase catalytic subunit; Belongs to the PI3/PI4-kinase family.
     
 0.508
PPP2R2D
Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B; Belongs to the phosphatase 2A regulatory subunit B family.
    
 0.506
NFIC
Nuclear factor 1 C-type.
      
 0.502
T11_15902
Serine/threonine-protein kinase PLK4.
    
 0.485
Otud7b
OTU domain-containing protein 7B.
    
  0.483
Your Current Organism:
Trichinella zimbabwensis
NCBI taxonomy Id: 268475
Other names: T. zimbabwensis, Trichinella zimbabwensis Pozio, Foggin, Marucci, La-Rosa, Sacchi, Corona, Rossi & Mukaratirwa, 2002
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