Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Nelfb | POLR2C-2 | A0A0V1I1D8 | A0A0V1HIC7 | Negative elongation factor B. | DNA-directed RNA polymerase II subunit RPB3. | 0.924 |
Nelfb | POLR2F | A0A0V1I1D8 | A0A0V1HK77 | Negative elongation factor B. | DNA-directed RNA polymerases I, II, and III subunit RPABC2. | 0.895 |
Nelfb | POLR2K | A0A0V1I1D8 | A0A0V1I673 | Negative elongation factor B. | DNA-directed RNA polymerases I, II, and III subunit RPABC4. | 0.894 |
Nelfb | Polr2b | A0A0V1I1D8 | A0A0V1H6X3 | Negative elongation factor B. | DNA-directed RNA polymerase II subunit RPB2. | 0.897 |
Nelfb | RpII215 | A0A0V1I1D8 | A0A0V1HDN4 | Negative elongation factor B. | DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.910 |
Nelfb | Rpb10 | A0A0V1I1D8 | A0A0V1HIV1 | Negative elongation factor B. | DNA-directed RNA polymerases I, II, and III subunit RPABC5. | 0.862 |
Nelfb | SUPT5H | A0A0V1I1D8 | A0A0V1H3V2 | Negative elongation factor B. | Transcription elongation factor SPT5. | 0.971 |
Nelfb | T11_14634 | A0A0V1I1D8 | A0A0V1I2E8 | Negative elongation factor B. | Uncharacterized protein. | 0.997 |
Nelfb | TH1 | A0A0V1I1D8 | A0A0V1HJM9 | Negative elongation factor B. | Negative elongation factor D. | 0.997 |
Nelfb | rpb-8 | A0A0V1I1D8 | A0A0V1I700 | Negative elongation factor B. | Putative DNA-directed RNA polymerases I, II, and III subunit RPABC3. | 0.899 |
POLR2C-2 | Nelfb | A0A0V1HIC7 | A0A0V1I1D8 | DNA-directed RNA polymerase II subunit RPB3. | Negative elongation factor B. | 0.924 |
POLR2C-2 | POLR2F | A0A0V1HIC7 | A0A0V1HK77 | DNA-directed RNA polymerase II subunit RPB3. | DNA-directed RNA polymerases I, II, and III subunit RPABC2. | 0.999 |
POLR2C-2 | POLR2K | A0A0V1HIC7 | A0A0V1I673 | DNA-directed RNA polymerase II subunit RPB3. | DNA-directed RNA polymerases I, II, and III subunit RPABC4. | 0.999 |
POLR2C-2 | Polr2b | A0A0V1HIC7 | A0A0V1H6X3 | DNA-directed RNA polymerase II subunit RPB3. | DNA-directed RNA polymerase II subunit RPB2. | 0.999 |
POLR2C-2 | RpII215 | A0A0V1HIC7 | A0A0V1HDN4 | DNA-directed RNA polymerase II subunit RPB3. | DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.999 |
POLR2C-2 | Rpb10 | A0A0V1HIC7 | A0A0V1HIV1 | DNA-directed RNA polymerase II subunit RPB3. | DNA-directed RNA polymerases I, II, and III subunit RPABC5. | 0.999 |
POLR2C-2 | SUPT5H | A0A0V1HIC7 | A0A0V1H3V2 | DNA-directed RNA polymerase II subunit RPB3. | Transcription elongation factor SPT5. | 0.993 |
POLR2C-2 | T11_14634 | A0A0V1HIC7 | A0A0V1I2E8 | DNA-directed RNA polymerase II subunit RPB3. | Uncharacterized protein. | 0.954 |
POLR2C-2 | TH1 | A0A0V1HIC7 | A0A0V1HJM9 | DNA-directed RNA polymerase II subunit RPB3. | Negative elongation factor D. | 0.896 |
POLR2C-2 | rpb-8 | A0A0V1HIC7 | A0A0V1I700 | DNA-directed RNA polymerase II subunit RPB3. | Putative DNA-directed RNA polymerases I, II, and III subunit RPABC3. | 0.999 |
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