XPNPEP3 protein (Trichinella zimbabwensis) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

XPNPEP3

Putative Xaa-Pro aminopeptidase 3. (812 aa)

Predicted Functional Partners:

PDPR

0.860

Amt

0.860

Coq3

0.730

iff-2

0.718

yars

0.700

coq6

0.700

pyroxd1

0.687

Sqrdl

0.687

T11_14938

0.687

AIFM1

0.687

Your Current Organism:

Trichinella zimbabwensis

NCBI taxonomy Id: 268475
Other names: T. zimbabwensis, Trichinella zimbabwensis Pozio, Foggin, Marucci, La-Rosa, Sacchi, Corona, Rossi & Mukaratirwa, 2002

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
AIFM1	Amt	A0A0V1HKC6	A0A0V1I5Y0	Apoptosis-inducing factor 1, mitochondrial.	Aminomethyltransferase, mitochondrial.	0.551
AIFM1	Coq3	A0A0V1HKC6	A0A0V1HYG9	Apoptosis-inducing factor 1, mitochondrial.	Ubiquinone biosynthesis O-methyltransferase, mitochondrial; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the class I-like SAM-binding methyltransferase superfamily. UbiG/COQ3 family.	0.497
AIFM1	PDPR	A0A0V1HKC6	A0A0V1H428	Apoptosis-inducing factor 1, mitochondrial.	Pyruvate dehydrogenase phosphatase regulatory subunit, mitochondrial.	0.551
AIFM1	XPNPEP3	A0A0V1HKC6	A0A0V1I322	Apoptosis-inducing factor 1, mitochondrial.	Putative Xaa-Pro aminopeptidase 3.	0.687
Amt	AIFM1	A0A0V1I5Y0	A0A0V1HKC6	Aminomethyltransferase, mitochondrial.	Apoptosis-inducing factor 1, mitochondrial.	0.551
Amt	Coq3	A0A0V1I5Y0	A0A0V1HYG9	Aminomethyltransferase, mitochondrial.	Ubiquinone biosynthesis O-methyltransferase, mitochondrial; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the class I-like SAM-binding methyltransferase superfamily. UbiG/COQ3 family.	0.684
Amt	Sqrdl	A0A0V1I5Y0	A0A0V1H6M7	Aminomethyltransferase, mitochondrial.	Sulfide:quinone oxidoreductase, mitochondrial.	0.551
Amt	T11_14938	A0A0V1I5Y0	A0A0V1H987	Aminomethyltransferase, mitochondrial.	Uncharacterized protein.	0.551
Amt	XPNPEP3	A0A0V1I5Y0	A0A0V1I322	Aminomethyltransferase, mitochondrial.	Putative Xaa-Pro aminopeptidase 3.	0.860
Amt	pyroxd1	A0A0V1I5Y0	A0A0V1GV42	Aminomethyltransferase, mitochondrial.	Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 1.	0.551
Coq3	AIFM1	A0A0V1HYG9	A0A0V1HKC6	Ubiquinone biosynthesis O-methyltransferase, mitochondrial; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the class I-like SAM-binding methyltransferase superfamily. UbiG/COQ3 family.	Apoptosis-inducing factor 1, mitochondrial.	0.497
Coq3	Amt	A0A0V1HYG9	A0A0V1I5Y0	Ubiquinone biosynthesis O-methyltransferase, mitochondrial; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the class I-like SAM-binding methyltransferase superfamily. UbiG/COQ3 family.	Aminomethyltransferase, mitochondrial.	0.684
Coq3	PDPR	A0A0V1HYG9	A0A0V1H428	Ubiquinone biosynthesis O-methyltransferase, mitochondrial; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the class I-like SAM-binding methyltransferase superfamily. UbiG/COQ3 family.	Pyruvate dehydrogenase phosphatase regulatory subunit, mitochondrial.	0.684
Coq3	Sqrdl	A0A0V1HYG9	A0A0V1H6M7	Ubiquinone biosynthesis O-methyltransferase, mitochondrial; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the class I-like SAM-binding methyltransferase superfamily. UbiG/COQ3 family.	Sulfide:quinone oxidoreductase, mitochondrial.	0.592
Coq3	T11_14938	A0A0V1HYG9	A0A0V1H987	Ubiquinone biosynthesis O-methyltransferase, mitochondrial; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the class I-like SAM-binding methyltransferase superfamily. UbiG/COQ3 family.	Uncharacterized protein.	0.497
Coq3	XPNPEP3	A0A0V1HYG9	A0A0V1I322	Ubiquinone biosynthesis O-methyltransferase, mitochondrial; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the class I-like SAM-binding methyltransferase superfamily. UbiG/COQ3 family.	Putative Xaa-Pro aminopeptidase 3.	0.730
Coq3	coq6	A0A0V1HYG9	A0A0V1I4S7	Ubiquinone biosynthesis O-methyltransferase, mitochondrial; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the class I-like SAM-binding methyltransferase superfamily. UbiG/COQ3 family.	Ubiquinone biosynthesis monooxygenase COQ6, mitochondrial; FAD-dependent monooxygenase required for the C5-ring hydroxylation during ubiquinone biosynthesis. Catalyzes the hydroxylation of 3-polyprenyl-4-hydroxybenzoic acid to 3-polyprenyl- 4,5-dihydroxybenzoic acid. The electrons required for the hydroxylation reaction may be funneled indirectly from NADPH via a ferredoxin/ferredoxin reductase system to COQ6.	0.966
Coq3	pyroxd1	A0A0V1HYG9	A0A0V1GV42	Ubiquinone biosynthesis O-methyltransferase, mitochondrial; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the class I-like SAM-binding methyltransferase superfamily. UbiG/COQ3 family.	Pyridine nucleotide-disulfide oxidoreductase domain-containing protein 1.	0.486
PDPR	AIFM1	A0A0V1H428	A0A0V1HKC6	Pyruvate dehydrogenase phosphatase regulatory subunit, mitochondrial.	Apoptosis-inducing factor 1, mitochondrial.	0.551
PDPR	Coq3	A0A0V1H428	A0A0V1HYG9	Pyruvate dehydrogenase phosphatase regulatory subunit, mitochondrial.	Ubiquinone biosynthesis O-methyltransferase, mitochondrial; O-methyltransferase that catalyzes the 2 O-methylation steps in the ubiquinone biosynthetic pathway; Belongs to the class I-like SAM-binding methyltransferase superfamily. UbiG/COQ3 family.	0.684