STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CDK7Cyclin-dependent kinase 7; Belongs to the protein kinase superfamily. (347 aa)    
Predicted Functional Partners:
Mnat1
CDK-activating kinase assembly factor MAT1; Belongs to the complex I LYR family.
   
 0.999
GTF2H3
General transcription factor IIH subunit 3.
    
 0.999
GTF2E2
General transcription factor IIE subunit 2.
   
 0.998
ERCC2
TFIIH basal transcription factor complex helicase XPD subunit.
    
 0.996
RpII215
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.995
Gtf2h2
General transcription factor IIH subunit.
   
 0.993
ttb-1
Transcription initiation factor IIB.
   
 0.993
tbp-1
TATA-box-binding protein.
   
 0.990
hay
DNA excision repair protein haywire.
    
 0.989
Rpb4
DNA-directed RNA polymerase II 16 kDa polypeptide.
   
 0.922
Your Current Organism:
Trichinella zimbabwensis
NCBI taxonomy Id: 268475
Other names: T. zimbabwensis, Trichinella zimbabwensis Pozio, Foggin, Marucci, La-Rosa, Sacchi, Corona, Rossi & Mukaratirwa, 2002
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.