STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Sf3a2Splicing factor 3A subunit 2. (266 aa)    
Predicted Functional Partners:
SF3B2
Splicing factor 3B subunit 2.
   
 0.999
T11_5807
Splicing factor 3B subunit 5; Belongs to the SF3B5 family.
   
 0.999
T11_14688
PHD finger-like domain-containing protein 5B.
    
 0.999
ddx46
Putative ATP-dependent RNA helicase DDX46.
    
 0.999
sap-49
Splicing factor 3B subunit 4.
   
 0.999
Sf3a1
Splicing factor 3A subunit 1.
   
 0.999
Snrpa1
U2 small nuclear ribonucleoprotein A.
    
 0.999
SF3B1
Splicing factor 3B subunit 1.
    
 0.999
Prpf6
Pre-mRNA-processing factor 6.
   
 
 0.998
CDC5L
Cell division cycle 5-like protein.
    
 
 0.997
Your Current Organism:
Trichinella zimbabwensis
NCBI taxonomy Id: 268475
Other names: T. zimbabwensis, Trichinella zimbabwensis Pozio, Foggin, Marucci, La-Rosa, Sacchi, Corona, Rossi & Mukaratirwa, 2002
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.