STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CBX5Chromobox-like protein 5. (386 aa)    
Predicted Functional Partners:
SUV39H1
Histone-lysine N-methyltransferase SUV39H1.
   
 0.796
SETMAR
Histone-lysine N-methyltransferase SETMAR.
    
 0.692
Setmar
Histone-lysine N-methyltransferase SETMAR.
    
 0.692
T11_18353
Histone H3.3.
   
 0.684
T11_12707
Histone H3.
   
 0.684
HHT3
Histone H3; Belongs to the histone H3 family.
   
 0.684
CSE4
Histone H3-like centromeric protein CSE4.
    
 0.671
PcgF3
Polycomb group RING finger protein 3.
    
 0.643
CHD3
Chromodomain-helicase-DNA-binding protein 3.
    
 0.637
htz-1
Histone H2A.V; Belongs to the histone H2A family.
   
 0.635
Your Current Organism:
Trichinella zimbabwensis
NCBI taxonomy Id: 268475
Other names: T. zimbabwensis, Trichinella zimbabwensis Pozio, Foggin, Marucci, La-Rosa, Sacchi, Corona, Rossi & Mukaratirwa, 2002
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.