STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CIR1-3Corepressor interacting with RBPJ 1. (389 aa)    
Predicted Functional Partners:
Su(H)
Suppressor of hairless protein.
    
 0.611
T11_18586
Histone deacetylase complex subunit SAP30-like protein.
    
 0.595
SNW1
SNW domain-containing protein 1.
   
 
 0.561
gei-8
Gex-3-interacting protein 8.
    
 0.546
CWC25
Pre-mRNA-splicing factor CWC25-like protein.
   
 
 0.536
T19C3.4
Putative pre-mRNA-splicing factor ATP-dependent RNA helicase mog-1.
   
 
 0.514
Prpf8
Pre-mRNA-processing-splicing factor 8.
    
 
 0.472
cwc15-a
Protein CWC15-like protein A.
   
   0.433
cwc22
Pre-mRNA-splicing factor CWC22-like protein.
   
   0.430
Your Current Organism:
Trichinella zimbabwensis
NCBI taxonomy Id: 268475
Other names: T. zimbabwensis, Trichinella zimbabwensis Pozio, Foggin, Marucci, La-Rosa, Sacchi, Corona, Rossi & Mukaratirwa, 2002
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.