STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
XA68_105225'-3' exoribonuclease; Possesses 5'->3' exoribonuclease activity. May promote termination of transcription by RNA polymerase II. (857 aa)    
Predicted Functional Partners:
XA68_13096
RAI1 domain-containing protein.
   
 
 0.990
XA68_17668
5'-3' exoribonuclease 1; Multifunctional protein that exhibits several independent functions at different levels of the cellular processes. 5'-3' exonuclease component of the nonsense-mediated mRNA decay (NMD) which is a highly conserved mRNA degradation pathway, an RNA surveillance system whose role is to identify and rid cells of mRNA with premature termination codons and thus prevents accumulation of potentially harmful truncated proteins.
  
 
0.980
XA68_10212
CID domain-containing protein.
    
 
 0.962
XA68_17426
Ras-GAP domain-containing protein.
 
      0.894
XA68_18202
3-phosphoshikimate 1-carboxyvinyltransferase; The AROM polypeptide catalyzes 5 consecutive enzymatic reactions in prechorismate polyaromatic amino acid biosynthesis. In the 2nd section; belongs to the EPSP synthase family. In the 4th section; belongs to the type-I 3-dehydroquinase family. In the N-terminal section; belongs to the dehydroquinate synthase family.
 
      0.844
XA68_15518
DRIM domain-containing protein.
   
  0.794
XA68_17100
Uncharacterized protein; Belongs to the DEAD box helicase family.
   
 0.763
XA68_13208
BP28CT domain-containing protein.
   
 
  0.759
XA68_14435
Uncharacterized protein.
   
  0.755
XA68_17330
Uncharacterized protein.
   
 0.754
Your Current Organism:
Ophiocordyceps unilateralis
NCBI taxonomy Id: 268505
Other names: Cordyceps unilateralis, O. unilateralis
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