XA68_13201 protein (Ophiocordyceps unilateralis)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

XA68_13201

Ubiquitin carboxyl-terminal hydrolase. (727 aa)

Predicted Functional Partners:

XA68_11153

0.998

XA68_10697

0.998

XA68_12392

0.906

XA68_12394

0.906

XA68_14853

0.881

XA68_16918

0.874

XA68_16919

0.874

XA68_13920

0.874

XA68_11918

0.832

XA68_17982

0.826

Your Current Organism:

Ophiocordyceps unilateralis

NCBI taxonomy Id: 268505
Other names: Cordyceps unilateralis, O. unilateralis

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
XA68_10697	XA68_11153	A0A2A9PIF8	A0A2A9PHE5	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.998
XA68_10697	XA68_12392	A0A2A9PIF8	A0A2A9PNA8	WD_REPEATS_REGION domain-containing protein.	Ubiquitin-like domain-containing protein.	0.683
XA68_10697	XA68_12394	A0A2A9PIF8	A0A2A9PPH8	WD_REPEATS_REGION domain-containing protein.	RRN7-type domain-containing protein.	0.683
XA68_10697	XA68_13201	A0A2A9PIF8	A0A2A9PB86	WD_REPEATS_REGION domain-containing protein.	Ubiquitin carboxyl-terminal hydrolase.	0.998
XA68_10697	XA68_13920	A0A2A9PIF8	A0A2A9PBL1	WD_REPEATS_REGION domain-containing protein.	Ubiquitin-like domain-containing protein.	0.517
XA68_10697	XA68_14853	A0A2A9PIF8	A0A2A9P7S6	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.517
XA68_10697	XA68_16918	A0A2A9PIF8	A0A2A9P3X5	WD_REPEATS_REGION domain-containing protein.	BZIP domain-containing protein.	0.517
XA68_10697	XA68_16919	A0A2A9PIF8	A0A2A9P5Q6	WD_REPEATS_REGION domain-containing protein.	CIA30 domain-containing protein.	0.517
XA68_11153	XA68_10697	A0A2A9PHE5	A0A2A9PIF8	WD_REPEATS_REGION domain-containing protein.	WD_REPEATS_REGION domain-containing protein.	0.998
XA68_11153	XA68_11918	A0A2A9PHE5	A0A2A9PFU1	WD_REPEATS_REGION domain-containing protein.	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	0.695
XA68_11153	XA68_12392	A0A2A9PHE5	A0A2A9PNA8	WD_REPEATS_REGION domain-containing protein.	Ubiquitin-like domain-containing protein.	0.885
XA68_11153	XA68_12394	A0A2A9PHE5	A0A2A9PPH8	WD_REPEATS_REGION domain-containing protein.	RRN7-type domain-containing protein.	0.885
XA68_11153	XA68_13201	A0A2A9PHE5	A0A2A9PB86	WD_REPEATS_REGION domain-containing protein.	Ubiquitin carboxyl-terminal hydrolase.	0.998
XA68_11153	XA68_13920	A0A2A9PHE5	A0A2A9PBL1	WD_REPEATS_REGION domain-containing protein.	Ubiquitin-like domain-containing protein.	0.832
XA68_11153	XA68_14853	A0A2A9PHE5	A0A2A9P7S6	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.956
XA68_11153	XA68_16918	A0A2A9PHE5	A0A2A9P3X5	WD_REPEATS_REGION domain-containing protein.	BZIP domain-containing protein.	0.832
XA68_11153	XA68_16919	A0A2A9PHE5	A0A2A9P5Q6	WD_REPEATS_REGION domain-containing protein.	CIA30 domain-containing protein.	0.832
XA68_11153	XA68_17982	A0A2A9PHE5	A0A2A9P287	WD_REPEATS_REGION domain-containing protein.	Uncharacterized protein.	0.818
XA68_11918	XA68_11153	A0A2A9PFU1	A0A2A9PHE5	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	WD_REPEATS_REGION domain-containing protein.	0.695
XA68_11918	XA68_12392	A0A2A9PFU1	A0A2A9PNA8	Proliferating cell nuclear antigen; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase's processibility during elongation of the leading strand; Belongs to the PCNA family.	Ubiquitin-like domain-containing protein.	0.916