Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| cbf5 | cmk2 | Nmlp_3391 | Nmlp_3392 | tRNA-Pro; Could be responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 2 subfamily. | Cytidylate kinase. | 0.942 |
| cbf5 | dim2 | Nmlp_3391 | Nmlp_3510 | tRNA-Pro; Could be responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 2 subfamily. | Probable ribosome biogenesis protein Dim2. | 0.887 |
| cbf5 | gar1 | Nmlp_3391 | Nmlp_3095 | tRNA-Pro; Could be responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 2 subfamily. | tRNA/rRNA pseudouridine synthase complex protein Gar1. | 0.999 |
| cbf5 | nop10 | Nmlp_3391 | Nmlp_2352 | tRNA-Pro; Could be responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 2 subfamily. | tRNA/rRNA pseudouridine synthase complex protein Nop10. | 0.999 |
| cbf5 | nop5 | Nmlp_3391 | Nmlp_2274 | tRNA-Pro; Could be responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 2 subfamily. | rRNA/tRNA 2'-O-methyltransferase complex protein Nop5. | 0.997 |
| cbf5 | nusA | Nmlp_3391 | Nmlp_3841 | tRNA-Pro; Could be responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 2 subfamily. | Transcription elongation factor NusA; Participates in transcription termination. Belongs to the NusA family. | 0.902 |
| cbf5 | rpl8e | Nmlp_3391 | Nmlp_2722 | tRNA-Pro; Could be responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 2 subfamily. | 50S ribosomal protein L8e; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs. | 0.998 |
| cbf5 | rps15 | Nmlp_3391 | Nmlp_2151 | tRNA-Pro; Could be responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 2 subfamily. | 30S ribosomal protein S15. | 0.930 |
| cbf5 | tif5B | Nmlp_3391 | Nmlp_3807 | tRNA-Pro; Could be responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 2 subfamily. | Translation initiation factor aIF-5B (bacterial-type IF2); Function in general translation initiation by promoting the binding of the formylmethionine-tRNA to ribosomes. Seems to function along with eIF-2. | 0.986 |
| cbf5 | tmcA | Nmlp_3391 | Nmlp_2736 | tRNA-Pro; Could be responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 2 subfamily. | tRNA(Met) cytidine acetyltransferase TmcA; Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of tRNA(Met), by using acetyl-CoA as an acetyl donor and ATP (or GTP). | 0.890 |
| cmk2 | cbf5 | Nmlp_3392 | Nmlp_3391 | Cytidylate kinase. | tRNA-Pro; Could be responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 2 subfamily. | 0.942 |
| cmk2 | nop5 | Nmlp_3392 | Nmlp_2274 | Cytidylate kinase. | rRNA/tRNA 2'-O-methyltransferase complex protein Nop5. | 0.459 |
| cmk2 | nusA | Nmlp_3392 | Nmlp_3841 | Cytidylate kinase. | Transcription elongation factor NusA; Participates in transcription termination. Belongs to the NusA family. | 0.768 |
| cmk2 | rpl8e | Nmlp_3392 | Nmlp_2722 | Cytidylate kinase. | 50S ribosomal protein L8e; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs. | 0.836 |
| cmk2 | rps15 | Nmlp_3392 | Nmlp_2151 | Cytidylate kinase. | 30S ribosomal protein S15. | 0.473 |
| dim2 | cbf5 | Nmlp_3510 | Nmlp_3391 | Probable ribosome biogenesis protein Dim2. | tRNA-Pro; Could be responsible for synthesis of pseudouridine from uracil-55 in the psi GC loop of transfer RNAs; Belongs to the pseudouridine synthase TruB family. Type 2 subfamily. | 0.887 |
| dim2 | nop10 | Nmlp_3510 | Nmlp_2352 | Probable ribosome biogenesis protein Dim2. | tRNA/rRNA pseudouridine synthase complex protein Nop10. | 0.559 |
| dim2 | nop5 | Nmlp_3510 | Nmlp_2274 | Probable ribosome biogenesis protein Dim2. | rRNA/tRNA 2'-O-methyltransferase complex protein Nop5. | 0.993 |
| dim2 | rpl8e | Nmlp_3510 | Nmlp_2722 | Probable ribosome biogenesis protein Dim2. | 50S ribosomal protein L8e; Multifunctional RNA-binding protein that recognizes the K- turn motif in ribosomal RNA, the RNA component of RNase P, box H/ACA, box C/D and box C'/D' sRNAs. | 0.951 |
| dim2 | rps15 | Nmlp_3510 | Nmlp_2151 | Probable ribosome biogenesis protein Dim2. | 30S ribosomal protein S15. | 0.966 |
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