Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
KPM56877.1Aldehyde dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (486 aa)    
Predicted Functional Partners:
KPM50740.1
Pyruvate-flavodoxin oxidoreductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.822
KPM50741.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.794
KPM50214.1
Erythronolide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.790
KPM52540.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.758
KPM56490.1
Glutamate synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.743
KPM53862.1
Polyketide synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.731
KPM52484.1
Acyl transferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.731
KPM52312.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
   
 0.706
KPM56174.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.704
KPM51903.1
Beta-ketoacyl synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 0.704
Your Current Organism:
Frankia sp. R43
NCBI taxonomy Id: 269536
Other names: F. sp. R43
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