STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KPM56963.1Type II secretion system protein E; Derived by automated computational analysis using gene prediction method: Protein Homology. (479 aa)    
Predicted Functional Partners:
KPM56964.1
Secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.915
KPM57682.1
Pilus assembly protein TadB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.903
KPM56962.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.864
KPM57681.1
Flagellar basal body P-ring biosynthesis protein FlgA; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.844
KPM51462.1
Pilus assembly protein TadB; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.792
KPM56965.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.734
KPM50371.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.652
KPM50555.1
Secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.645
KPM56966.1
Pilus assembly protein TadE; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
    0.640
KPM52690.1
Secretion system protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.635
Your Current Organism:
Frankia sp. R43
NCBI taxonomy Id: 269536
Other names: F. sp. R43
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.