Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
KPM56192.1XRE family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (287 aa)    
Predicted Functional Partners:
KPM55344.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.976
KPM57300.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.972
KPM51459.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.969
KPM56081.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.962
KPM51763.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.946
KPM52736.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.941
KPM53574.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.936
KPM54399.1
Diguanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.934
KPM50497.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.901
KPM55810.1
Histidine kinase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.890
Your Current Organism:
Frankia sp. R43
NCBI taxonomy Id: 269536
Other names: F. sp. R43
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