STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
KPM53888.1TetR family transcriptional regulator; Derived by automated computational analysis using gene prediction method: Protein Homology. (273 aa)    
Predicted Functional Partners:
KPM53887.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.929
KPM53647.1
ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
   
 0.845
KPM57433.1
Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.
     
 0.595
KPM51802.1
Methyltransferase; Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity.
  
     0.409
KPM54963.1
Pyruvate kinase; Catalyzes the formation of phosphoenolpyruvate from pyruvate; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
  0.404
Your Current Organism:
Frankia sp. R43
NCBI taxonomy Id: 269536
Other names: F. sp. R43
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