KPM52568.1 protein (Frankia sp. R43) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KPM52568.1

Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology. (367 aa)

Predicted Functional Partners:

KPM52554.1

0.772

KPM56607.1

0.691

KPM50403.1

0.602

KPM54567.1

0.516

KPM50854.1

0.484

KPM51111.1

0.433

Your Current Organism:

Frankia sp. R43

NCBI taxonomy Id: 269536
Other names: F. sp. R43

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structured XML interaction data, according to the 'PSI-MI' data standard

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a flat-file format describing the coordinates and colors of nodes in the network

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KPM50403.1	KPM50854.1	ACG83_40465	ACG83_38240	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.665
KPM50403.1	KPM52554.1	ACG83_40465	ACG83_30065	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.606
KPM50403.1	KPM52568.1	ACG83_40465	ACG83_30180	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.602
KPM50403.1	KPM54567.1	ACG83_40465	ACG83_21125	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.686
KPM50854.1	KPM50403.1	ACG83_38240	ACG83_40465	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.665
KPM50854.1	KPM52568.1	ACG83_38240	ACG83_30180	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.484
KPM51111.1	KPM52568.1	ACG83_37460	ACG83_30180	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.433
KPM51111.1	KPM56607.1	ACG83_37460	ACG83_01480	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.465
KPM52554.1	KPM50403.1	ACG83_30065	ACG83_40465	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.606
KPM52554.1	KPM52568.1	ACG83_30065	ACG83_30180	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.772
KPM52554.1	KPM56607.1	ACG83_30065	ACG83_01480	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.691
KPM52568.1	KPM50403.1	ACG83_30180	ACG83_40465	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.602
KPM52568.1	KPM50854.1	ACG83_30180	ACG83_38240	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.484
KPM52568.1	KPM51111.1	ACG83_30180	ACG83_37460	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.433
KPM52568.1	KPM52554.1	ACG83_30180	ACG83_30065	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.772
KPM52568.1	KPM54567.1	ACG83_30180	ACG83_21125	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.516
KPM52568.1	KPM56607.1	ACG83_30180	ACG83_01480	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.691
KPM54567.1	KPM50403.1	ACG83_21125	ACG83_40465	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.686
KPM54567.1	KPM52568.1	ACG83_21125	ACG83_30180	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.516
KPM56607.1	KPM51111.1	ACG83_01480	ACG83_37460	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.465