KPM51178.1 protein (Frankia sp. R43) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

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Textmining

[Homology]

Score

KPM51178.1

DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (306 aa)

Predicted Functional Partners:

KPM53832.1

0.832

KPM53495.1

0.825

KPM51043.1

0.824

KPM57722.1

0.821

KPM53314.1

0.821

KPM51044.1

0.784

KPM54658.1

0.737

KPM51179.1

0.720

KPM55888.1

0.606

KPM53237.1

0.600

Your Current Organism:

Frankia sp. R43

NCBI taxonomy Id: 269536
Other names: F. sp. R43

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structured XML interaction data, according to the 'PSI-MI' data standard

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

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a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KPM51043.1	KPM51044.1	ACG83_37030	ACG83_37040	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.767
KPM51043.1	KPM51178.1	ACG83_37030	ACG83_37035	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.824
KPM51043.1	KPM51179.1	ACG83_37030	ACG83_37045	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.705
KPM51044.1	KPM51043.1	ACG83_37040	ACG83_37030	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.767
KPM51044.1	KPM51178.1	ACG83_37040	ACG83_37035	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.784
KPM51044.1	KPM51179.1	ACG83_37040	ACG83_37045	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.779
KPM51178.1	KPM51043.1	ACG83_37035	ACG83_37030	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.824
KPM51178.1	KPM51044.1	ACG83_37035	ACG83_37040	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.784
KPM51178.1	KPM51179.1	ACG83_37035	ACG83_37045	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.720
KPM51178.1	KPM53237.1	ACG83_37035	ACG83_27185	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Guanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.600
KPM51178.1	KPM53314.1	ACG83_37035	ACG83_21475	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.821
KPM51178.1	KPM53495.1	ACG83_37035	ACG83_22675	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Response regulator receiver protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.825
KPM51178.1	KPM53832.1	ACG83_37035	ACG83_22685	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Chemotaxis protein CheY; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.832
KPM51178.1	KPM54658.1	ACG83_37035	ACG83_14375	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.737
KPM51178.1	KPM55888.1	ACG83_37035	ACG83_11675	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.606
KPM51178.1	KPM57722.1	ACG83_37035	ACG83_04970	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.821
KPM51179.1	KPM51043.1	ACG83_37045	ACG83_37030	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.705
KPM51179.1	KPM51044.1	ACG83_37045	ACG83_37040	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.779
KPM51179.1	KPM51178.1	ACG83_37045	ACG83_37035	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.720
KPM53237.1	KPM51178.1	ACG83_27185	ACG83_37035	Guanylate cyclase; Derived by automated computational analysis using gene prediction method: Protein Homology.	DNA-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.600