KPM50576.1 protein (Frankia sp. R43) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

KPM50576.1

protein-L-isoaspartate O-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology. (408 aa)

Predicted Functional Partners:

KPM50573.1

0.671

KPM50574.1

0.657

KPM50575.1

0.601

KPM50648.1

0.590

ispE

0.489

KPM50572.1

0.425

Your Current Organism:

Frankia sp. R43

NCBI taxonomy Id: 269536
Other names: F. sp. R43

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
KPM50572.1	KPM50573.1	ACG83_39140	ACG83_39145	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.783
KPM50572.1	KPM50574.1	ACG83_39140	ACG83_39150	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lantibiotic modifying enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.767
KPM50572.1	KPM50575.1	ACG83_39140	ACG83_39155	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lantibiotic dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.767
KPM50572.1	KPM50576.1	ACG83_39140	ACG83_39165	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	protein-L-isoaspartate O-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.425
KPM50572.1	KPM50648.1	ACG83_39140	ACG83_39160	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.566
KPM50573.1	KPM50572.1	ACG83_39145	ACG83_39140	Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.783
KPM50573.1	KPM50574.1	ACG83_39145	ACG83_39150	Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lantibiotic modifying enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.945
KPM50573.1	KPM50575.1	ACG83_39145	ACG83_39155	Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lantibiotic dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.947
KPM50573.1	KPM50576.1	ACG83_39145	ACG83_39165	Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	protein-L-isoaspartate O-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.671
KPM50573.1	KPM50648.1	ACG83_39145	ACG83_39160	Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.561
KPM50573.1	ispE	ACG83_39145	ACG83_07550	Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	4-diphosphocytidyl-2C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol.	0.448
KPM50574.1	KPM50572.1	ACG83_39150	ACG83_39140	Lantibiotic modifying enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.767
KPM50574.1	KPM50573.1	ACG83_39150	ACG83_39145	Lantibiotic modifying enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.	Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.945
KPM50574.1	KPM50575.1	ACG83_39150	ACG83_39155	Lantibiotic modifying enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lantibiotic dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.950
KPM50574.1	KPM50576.1	ACG83_39150	ACG83_39165	Lantibiotic modifying enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.	protein-L-isoaspartate O-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.657
KPM50574.1	KPM50648.1	ACG83_39150	ACG83_39160	Lantibiotic modifying enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.559
KPM50575.1	KPM50572.1	ACG83_39155	ACG83_39140	Lantibiotic dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.767
KPM50575.1	KPM50573.1	ACG83_39155	ACG83_39145	Lantibiotic dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.947
KPM50575.1	KPM50574.1	ACG83_39155	ACG83_39150	Lantibiotic dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	Lantibiotic modifying enzyme; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.950
KPM50575.1	KPM50576.1	ACG83_39155	ACG83_39165	Lantibiotic dehydratase; Derived by automated computational analysis using gene prediction method: Protein Homology.	protein-L-isoaspartate O-methyltransferase; Derived by automated computational analysis using gene prediction method: Protein Homology.	0.601