STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CLP1mRNA cleavage and polyadenylation factor CLP1; Required for endonucleolytic cleavage during polyadenylation- dependent pre-mRNA 3'-end formation. (515 aa)    
Predicted Functional Partners:
BQ2448_1637
BQ2448_1637 protein.
    
 0.998
BQ2448_5338
BQ2448_5338 protein.
   
 0.988
BQ2448_1748
BQ2448_1748 protein.
    
 0.939
BQ2448_6626
BQ2448_6626 protein.
    
 0.936
BQ2448_4056
BQ2448_4056 protein.
    
 0.935
BQ2448_4329
BQ2448_4329 protein.
    
 
 0.928
BQ2448_6092
Cleavage and polyadenylation specificity factor subunit 2.
   
 0.923
BQ2448_7952
BQ2448_7952 protein.
    
 0.914
BQ2448_4767
BQ2448_4767 protein.
   
 0.899
BQ2448_5310
BQ2448_5310 protein.
   
 0.887
Your Current Organism:
Microbotryum intermedium
NCBI taxonomy Id: 269621
Other names: HUV 3895, M. intermedium, Ustilago intermedia
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.