BQ2448_5610 protein (Microbotryum intermedium)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

BQ2448_5610

BQ2448_5610 protein. (187 aa)

Predicted Functional Partners:

BQ2448_4370

0.935

BQ2448_1628

0.709

BQ2448_484

0.613

BQ2448_2025

0.608

BQ2448_4030

0.452

BQ2448_3827

0.445

BQ2448_5823

0.425

BQ2448_1939

0.410

Your Current Organism:

Microbotryum intermedium

NCBI taxonomy Id: 269621
Other names: HUV 3895, M. intermedium, Ustilago intermedia

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BQ2448_1628	BQ2448_2025	A0A238FEC7	A0A238F735	BQ2448_1628 protein.	BQ2448_2025 protein.	0.712
BQ2448_1628	BQ2448_4370	A0A238FEC7	A0A238FLD9	BQ2448_1628 protein.	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	0.995
BQ2448_1628	BQ2448_5610	A0A238FEC7	A0A238F5A9	BQ2448_1628 protein.	BQ2448_5610 protein.	0.709
BQ2448_1628	BQ2448_5823	A0A238FEC7	A0A238F2B3	BQ2448_1628 protein.	BQ2448_5823 protein.	0.879
BQ2448_1939	BQ2448_5610	A0A238F832	A0A238F5A9	BQ2448_1939 protein.	BQ2448_5610 protein.	0.410
BQ2448_2025	BQ2448_1628	A0A238F735	A0A238FEC7	BQ2448_2025 protein.	BQ2448_1628 protein.	0.712
BQ2448_2025	BQ2448_4370	A0A238F735	A0A238FLD9	BQ2448_2025 protein.	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	0.967
BQ2448_2025	BQ2448_484	A0A238F735	A0A238F8L1	BQ2448_2025 protein.	BQ2448_484 protein.	0.522
BQ2448_2025	BQ2448_5610	A0A238F735	A0A238F5A9	BQ2448_2025 protein.	BQ2448_5610 protein.	0.608
BQ2448_2025	BQ2448_5823	A0A238F735	A0A238F2B3	BQ2448_2025 protein.	BQ2448_5823 protein.	0.650
BQ2448_3827	BQ2448_5610	A0A238FD00	A0A238F5A9	Saccharopine dehydrogenase [NAD(+), L-lysine-forming]; Belongs to the AlaDH/PNT family.	BQ2448_5610 protein.	0.445
BQ2448_4030	BQ2448_5610	A0A238FKH8	A0A238F5A9	BQ2448_4030 protein.	BQ2448_5610 protein.	0.452
BQ2448_4370	BQ2448_1628	A0A238FLD9	A0A238FEC7	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	BQ2448_1628 protein.	0.995
BQ2448_4370	BQ2448_2025	A0A238FLD9	A0A238F735	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	BQ2448_2025 protein.	0.967
BQ2448_4370	BQ2448_484	A0A238FLD9	A0A238F8L1	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	BQ2448_484 protein.	0.977
BQ2448_4370	BQ2448_5610	A0A238FLD9	A0A238F5A9	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	BQ2448_5610 protein.	0.935
BQ2448_4370	BQ2448_5823	A0A238FLD9	A0A238F2B3	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	BQ2448_5823 protein.	0.970
BQ2448_484	BQ2448_2025	A0A238F8L1	A0A238F735	BQ2448_484 protein.	BQ2448_2025 protein.	0.522
BQ2448_484	BQ2448_4370	A0A238F8L1	A0A238FLD9	BQ2448_484 protein.	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	0.977
BQ2448_484	BQ2448_5610	A0A238F8L1	A0A238F5A9	BQ2448_484 protein.	BQ2448_5610 protein.	0.613