STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BQ2448_5192BQ2448_5192 protein. (1134 aa)    
Predicted Functional Partners:
BQ2448_6460
Protein transport protein SEC23; Component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). The coat has two main functions, the physical deformation of the endoplasmic reticulum membrane into vesicles and the selection of cargo molecules; Belongs to the SEC23/SEC24 family. SEC23 subfamily.
   
 0.998
BQ2448_6770
BQ2448_6770 protein.
   
0.995
BQ2448_406
BQ2448_406 protein; Belongs to the WD repeat SEC13 family.
   
 0.991
BQ2448_4652
Protein transport protein sec16; Involved in the initiation of assembly of the COPII coat required for the formation of transport vesicles from the endoplasmic reticulum (ER) and the selection of cargo molecules. Also involved in autophagy; Belongs to the SEC16 family.
   
 0.985
BQ2448_74
BQ2448_74 protein.
   
 0.977
BQ2448_4808
BQ2448_4808 protein; Belongs to the small GTPase superfamily. SAR1 family.
     
 0.870
BQ2448_2989
BQ2448_2989 protein.
    
 0.830
BQ2448_7095
BQ2448_7095 protein.
   
 0.818
BQ2448_682
BQ2448_682 protein.
   
 
 0.796
BQ2448_7557
BQ2448_7557 protein.
   
 0.793
Your Current Organism:
Microbotryum intermedium
NCBI taxonomy Id: 269621
Other names: HUV 3895, M. intermedium, Ustilago intermedia
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.