STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BQ2448_1464BQ2448_1464 protein. (707 aa)    
Predicted Functional Partners:
BQ2448_6093
BQ2448_6093 protein; Belongs to the small GTPase superfamily. Arf family.
    
 
 0.758
BQ2448_406
BQ2448_406 protein; Belongs to the WD repeat SEC13 family.
 
      0.676
BQ2448_2802
BQ2448_2802 protein.
   
 
 0.589
BQ2448_4652
Protein transport protein sec16; Involved in the initiation of assembly of the COPII coat required for the formation of transport vesicles from the endoplasmic reticulum (ER) and the selection of cargo molecules. Also involved in autophagy; Belongs to the SEC16 family.
   
 
 0.589
BQ2448_4211
BQ2448_4211 protein.
    
 
 0.540
BQ2448_876
BQ2448_876 protein.
 
      0.498
BQ2448_5332
BQ2448_5332 protein.
    
 
 0.487
BQ2448_1012
GPN-loop GTPase; Small GTPase required for proper nuclear import of RNA polymerase II (RNAPII). May act at an RNAP assembly step prior to nuclear import.
 
      0.450
BQ2448_3053
BQ2448_3053 protein.
    
 
 0.440
Your Current Organism:
Microbotryum intermedium
NCBI taxonomy Id: 269621
Other names: HUV 3895, M. intermedium, Ustilago intermedia
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.