STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BQ2448_4307BQ2448_4307 protein. (434 aa)    
Predicted Functional Partners:
BQ2448_5710
BQ2448_5710 protein.
   
 0.998
BQ2448_6415
BQ2448_6415 protein.
   
 0.998
BQ2448_6109
BQ2448_6109 protein.
   
 0.998
BQ2448_6579
BQ2448_6579 protein.
   
 0.997
BQ2448_1847
BQ2448_1847 protein.
  
 
 0.989
BQ2448_6616
BQ2448_6616 protein.
    
 0.989
BQ2448_1910
BQ2448_1910 protein.
  
 
   0.986
BQ2448_3016
BQ2448_3016 protein.
   
   0.979
BQ2448_8088
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.976
BQ2448_2705
Spliceosomal protein DIB1; Essential role in pre-mRNA splicing. Also essential for entry into mitosis (G2/M progression) as well as for chromosome segregation during mitosis; Belongs to the DIM1 family.
    
 0.975
Your Current Organism:
Microbotryum intermedium
NCBI taxonomy Id: 269621
Other names: HUV 3895, M. intermedium, Ustilago intermedia
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