BQ2448_4931 protein (Microbotryum intermedium)

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second shell of interactors

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

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co-expression

protein homology

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Score

BQ2448_4931

BQ2448_4931 protein; Belongs to the small GTPase superfamily. Arf family. (173 aa)

Predicted Functional Partners:

BQ2448_3216

0.979

BQ2448_4828

0.958

BQ2448_8054

0.958

BQ2448_4786

0.949

BQ2448_2172

0.912

BQ2448_58

0.855

BQ2448_7797

0.841

BQ2448_87

0.838

BQ2448_6476

0.821

BQ2448_7308

0.819

Your Current Organism:

Microbotryum intermedium

NCBI taxonomy Id: 269621
Other names: HUV 3895, M. intermedium, Ustilago intermedia

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
BQ2448_2172	BQ2448_3216	A0A238F5G2	A0A238FKD3	BQ2448_2172 protein.	BQ2448_3216 protein.	0.559
BQ2448_2172	BQ2448_4931	A0A238F5G2	A0A238FG78	BQ2448_2172 protein.	BQ2448_4931 protein; Belongs to the small GTPase superfamily. Arf family.	0.912
BQ2448_2172	BQ2448_58	A0A238F5G2	A0A238F4F8	BQ2448_2172 protein.	BQ2448_58 protein.	0.416
BQ2448_2172	BQ2448_7308	A0A238F5G2	A0A238FHV4	BQ2448_2172 protein.	Lysophospholipase; Belongs to the syntaxin family.	0.847
BQ2448_2172	BQ2448_7797	A0A238F5G2	A0A238FU68	BQ2448_2172 protein.	Conserved oligomeric Golgi complex subunit 6; Acts as component of the peripheral membrane COG complex that is involved in intra-Golgi protein trafficking. COG is located at the cis-Golgi, and regulates tethering of retrograde intra-Golgi vesicles and possibly a number of other membrane trafficking events.	0.880
BQ2448_3216	BQ2448_2172	A0A238FKD3	A0A238F5G2	BQ2448_3216 protein.	BQ2448_2172 protein.	0.559
BQ2448_3216	BQ2448_4931	A0A238FKD3	A0A238FG78	BQ2448_3216 protein.	BQ2448_4931 protein; Belongs to the small GTPase superfamily. Arf family.	0.979
BQ2448_3216	BQ2448_6476	A0A238FKD3	A0A238FQ86	BQ2448_3216 protein.	BQ2448_6476 protein.	0.872
BQ2448_4786	BQ2448_4931	A0A238FE42	A0A238FG78	BQ2448_4786 protein.	BQ2448_4931 protein; Belongs to the small GTPase superfamily. Arf family.	0.949
BQ2448_4786	BQ2448_58	A0A238FE42	A0A238F4F8	BQ2448_4786 protein.	BQ2448_58 protein.	0.933
BQ2448_4828	BQ2448_4931	A0A238FJR7	A0A238FG78	BQ2448_4828 protein.	BQ2448_4931 protein; Belongs to the small GTPase superfamily. Arf family.	0.958
BQ2448_4828	BQ2448_6476	A0A238FJR7	A0A238FQ86	BQ2448_4828 protein.	BQ2448_6476 protein.	0.767
BQ2448_4828	BQ2448_8054	A0A238FJR7	A0A238FPB1	BQ2448_4828 protein.	BQ2448_8054 protein.	0.685
BQ2448_4931	BQ2448_2172	A0A238FG78	A0A238F5G2	BQ2448_4931 protein; Belongs to the small GTPase superfamily. Arf family.	BQ2448_2172 protein.	0.912
BQ2448_4931	BQ2448_3216	A0A238FG78	A0A238FKD3	BQ2448_4931 protein; Belongs to the small GTPase superfamily. Arf family.	BQ2448_3216 protein.	0.979
BQ2448_4931	BQ2448_4786	A0A238FG78	A0A238FE42	BQ2448_4931 protein; Belongs to the small GTPase superfamily. Arf family.	BQ2448_4786 protein.	0.949
BQ2448_4931	BQ2448_4828	A0A238FG78	A0A238FJR7	BQ2448_4931 protein; Belongs to the small GTPase superfamily. Arf family.	BQ2448_4828 protein.	0.958
BQ2448_4931	BQ2448_58	A0A238FG78	A0A238F4F8	BQ2448_4931 protein; Belongs to the small GTPase superfamily. Arf family.	BQ2448_58 protein.	0.855
BQ2448_4931	BQ2448_6476	A0A238FG78	A0A238FQ86	BQ2448_4931 protein; Belongs to the small GTPase superfamily. Arf family.	BQ2448_6476 protein.	0.821
BQ2448_4931	BQ2448_7308	A0A238FG78	A0A238FHV4	BQ2448_4931 protein; Belongs to the small GTPase superfamily. Arf family.	Lysophospholipase; Belongs to the syntaxin family.	0.819

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Network Stats

number of nodes:

11

number of edges:

19

average node degree:

3.45

avg. local clustering coefficient:

0.852

expected number of edges:

13

PPI enrichment p-value:

0.0832

your network does not have significantly more
interactions than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0035601

Protein deacylation

2 of 22

2.23

1.18

0.0155

GO:0006357

Regulation of transcription by RNA polymerase II

5 of 470

1.3

1.09

0.0030

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0004407

Histone deacetylase activity

2 of 9

2.62

1.12

0.0213

GO:0000977

RNA polymerase II transcription regulatory region sequence-specific DNA binding

3 of 95

1.77

1.01

0.0213

GO:0000981

DNA-binding transcription factor activity, RNA polymerase II-specific

3 of 233

1.38

0.8

0.0315

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:9511

Mixed, incl. Homeobox, and CCAAT-binding factor complex

3 of 27

2.31

2.01

0.00071

CL:2967

Rpd3S/Clr6-CII complex, and Sds3-like

2 of 6

2.79

1.66

0.0034

CL:9514

Mixed, incl. Homeobox, and Senescence-Associated Secretory Phenotype (SASP)

2 of 17

2.34

1.22

0.0140

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

map04213

Longevity regulating pathway - multiple species

2 of 11

2.53

1.67

0.0030

Protein Domains (Pfam)

domain

description

count in network

strength

signal

false discovery rate

PF00850

Histone deacetylase domain

2 of 4

2.97

1.62

0.0040

Protein Domains and Features (InterPro)

domain

description

count in network

strength

signal

false discovery rate

IPR003084

Histone deacetylase

2 of 2

3.27

1.59

0.0045

IPR000286

Histone deacetylase family

2 of 3

3.09

1.59

0.0045

IPR037138

Histone deacetylase domain superfamily

2 of 4

2.97

1.58

0.0045

IPR023801

Histone deacetylase domain

2 of 4

2.97

1.58

0.0045

IPR023696

Ureohydrolase domain superfamily

2 of 10

2.57

1.34

0.0098

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