STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BQ2448_424620S-pre-rRNA D-site endonuclease NOB1; Required for the synthesis of 40S ribosome subunits. Has a role in processing 20S pre-rRNA into the mature 18S rRNA, where it is required for cleavage at the 3' end of the mature 18S rRNA (D-site). Accompanies the 20S pre-rRNA from the nucleus to the cytoplasm. Belongs to the NOB1 family. (485 aa)    
Predicted Functional Partners:
BQ2448_5578
BQ2448_5578 protein.
   
 0.999
BQ2448_5137
BQ2448_5137 protein.
   
 0.999
BQ2448_3431
BQ2448_3431 protein.
   
 0.999
BQ2448_2930
BQ2448_2930 protein.
   
 0.998
BQ2448_6275
BQ2448_6275 protein.
   
 0.995
BQ2448_3686
BQ2448_3686 protein; Belongs to the universal ribosomal protein uS7 family.
   
 0.990
BQ2448_7907
BQ2448_7907 protein; Belongs to the universal ribosomal protein uS11 family.
   
 0.988
BQ2448_6936
BQ2448_6936 protein; Belongs to the universal ribosomal protein uS4 family.
   
 0.987
BQ2448_5186
BQ2448_5186 protein; Belongs to the universal ribosomal protein uS19 family.
    
 0.986
BQ2448_1181
BQ2448_1181 protein.
    
  0.986
Your Current Organism:
Microbotryum intermedium
NCBI taxonomy Id: 269621
Other names: HUV 3895, M. intermedium, Ustilago intermedia
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.