STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BQ2448_6581BQ2448_6581 protein. (677 aa)    
Predicted Functional Partners:
BQ2448_3220
BQ2448_3220 protein.
    
 
0.696
BQ2448_3596
Geranylgeranyl transferase type-2 subunit beta; Catalyzes the transfer of a geranylgeranyl moiety from geranylgeranyl diphosphate to both cysteines of proteins with the C- terminal sequence -XXCC, -XCXC and -CCXX.
   
    0.544
BQ2448_2850
BQ2448_2850 protein.
    
 
 0.535
BQ2448_892
BQ2448_892 protein.
    
   0.522
BQ2448_4085
BQ2448_4085 protein.
   
 
 0.490
BQ2448_7351
BQ2448_7351 protein.
   
 
 0.468
BQ2448_2486
BQ2448_2486 protein.
   
 
 0.442
BQ2448_4070
BQ2448_4070 protein.
    
   0.442
BQ2448_6906
BQ2448_6906 protein.
   
 
 0.442
BQ2448_7845
BQ2448_7845 protein.
    
   0.441
Your Current Organism:
Microbotryum intermedium
NCBI taxonomy Id: 269621
Other names: HUV 3895, M. intermedium, Ustilago intermedia
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.