STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
BQ2448_7884BQ2448_7884 protein. (858 aa)    
Predicted Functional Partners:
BQ2448_5653
BQ2448_5653 protein.
    
  0.534
BQ2448_4828
BQ2448_4828 protein.
    
  0.511
BQ2448_8054
BQ2448_8054 protein.
    
  0.511
SUS1
Transcription and mRNA export factor SUS1; Involved in mRNA export coupled transcription activation by association with both the TREX-2 and the SAGA complexes. At the promoters, SAGA is required for recruitment of the basal transcription machinery. It influences RNA polymerase II transcriptional activity through different activities such as TBP interaction and promoter selectivity, interaction with transcription activators, and chromatin modification through histone acetylation and deubiquitination. Within the SAGA complex, participates to a subcomplex required for deubiquitination of [...]
    
 0.507
BQ2448_1273
BQ2448_1273 protein.
    
 0.493
BQ2448_6249
BQ2448_6249 protein; Belongs to the PI3/PI4-kinase family.
    
 0.481
BQ2448_3934
BQ2448_3934 protein.
    
 0.469
BQ2448_5605
BQ2448_5605 protein.
    
 0.464
BQ2448_6188
BQ2448_6188 protein.
    
 0.460
BQ2448_6507
BQ2448_6507 protein.
    
 0.459
Your Current Organism:
Microbotryum intermedium
NCBI taxonomy Id: 269621
Other names: HUV 3895, M. intermedium, Ustilago intermedia
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.