STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFH90500.12,4-dienoyl-CoA reductase. (387 aa)    
Predicted Functional Partners:
SFJ47423.1
Electron transfer flavoprotein beta subunit.
   
 
 0.866
SFI28551.1
Glutamate synthase (NADPH/NADH) large chain.
    
 0.799
SFJ47399.1
Electron transfer flavoprotein alpha subunit apoprotein.
   
 
 0.779
SFI29216.1
3-hydroxyacyl-CoA dehydrogenase / enoyl-CoA hydratase / 3-hydroxybutyryl-CoA epimerase.
  
 
 0.735
SFI99392.1
3-hydroxyacyl-CoA dehydrogenase.
  
 
 0.735
SFH90518.1
Protein of unknown function, DUF485.
       0.634
SFH90537.1
Cation/acetate symporter; Belongs to the sodium:solute symporter (SSF) (TC 2.A.21) family.
  
    0.609
SFI04007.1
Transcriptional regulator, CarD family.
   
    0.509
SFJ25907.1
Acyl transferase domain-containing protein.
  
 
 0.503
SFI07042.1
Phenylpropionate dioxygenase, large terminal subunit.
    
 0.478
Your Current Organism:
Methylobacterium brachiatum
NCBI taxonomy Id: 269660
Other names: DSM 19569, M. brachiatum, Methylobacterium brachiatum Kato et al. 2008, Methylobacterium sp. B0021, Methylobacterium sp. Hojyo2, Methylobacterium sp. RB603B, NBRC 103629, NCIMB 14379, strain B0021
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