STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFJ07095.1Tetratricopeptide repeat-containing protein. (306 aa)    
Predicted Functional Partners:
alaS
alanyl-tRNA synthetase; Catalyzes the attachment of alanine to tRNA(Ala) in a two- step reaction: alanine is first activated by ATP to form Ala-AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain.
   
 0.986
SFI27071.1
WD domain, G-beta repeat.
    
 0.982
htpG
Molecular chaperone HtpG; Molecular chaperone. Has ATPase activity.
  
 0.976
SFJ07126.1
Oxygen tolerance.
 
 
 0.974
SFJ63337.1
Hypothetical protein.
   
 0.970
SFJ06937.1
Protein of unknown function DUF58.
 
  
 0.955
SFJ07005.1
Ca-activated chloride channel family protein.
 
   
 0.952
SFJ07068.1
Ca-activated chloride channel family protein.
 
     0.952
rpoA
DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 0.943
SFI88092.1
Hypothetical chaperone protein.
   
 0.916
Your Current Organism:
Methylobacterium brachiatum
NCBI taxonomy Id: 269660
Other names: DSM 19569, M. brachiatum, Methylobacterium brachiatum Kato et al. 2008, Methylobacterium sp. B0021, Methylobacterium sp. Hojyo2, Methylobacterium sp. RB603B, NBRC 103629, NCIMB 14379, strain B0021
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.