STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFG11211.1YqzE-like protein. (67 aa)    
Predicted Functional Partners:
SFG11259.1
Competence protein ComGF.
  
    0.761
SFG11343.1
Competence protein ComGC; Required for transformation and DNA binding.
  
    0.760
SFG08097.1
Competence protein ComEC.
   
    0.593
SFG11318.1
Prepilin-type N-terminal cleavage/methylation domain-containing protein.
       0.554
SFG11236.1
ComG operon protein 7.
       0.549
SFG88425.1
Competence protein ComGB.
  
    0.538
SFG88399.1
Competence protein ComGA.
  
    0.536
SFG11290.1
Hypothetical protein.
       0.495
SFG06982.1
Leader peptidase (prepilin peptidase) / N-methyltransferase.
   
    0.438
Your Current Organism:
Sporolactobacillus nakayamae
NCBI taxonomy Id: 269670
Other names: ATCC 700379, CCUG 41660, CIP 105319, DSM 11696, JCM 3514, LMG 18787, LMG:18787, NBRC 101526, S. nakayamae, strain M-114
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.