STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFG16155.1O-acetyl-ADP-ribose deacetylase (regulator of RNase III), contains Macro domain. (172 aa)    
Predicted Functional Partners:
SFG07030.1
Putative ATPase.
      0.905
cmk
Cytidylate kinase.
 
      0.594
SFG16133.1
Transposase.
       0.490
SFG18227.1
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase; Belongs to the sulfur carrier protein TusA family.
  
  0.468
SFG47109.1
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase; Belongs to the sulfur carrier protein TusA family.
  
  0.468
SFG18286.1
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase.
  
  0.404
SFG47196.1
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase.
  
  0.404
SFG65126.1
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase.
  
  0.404
Your Current Organism:
Sporolactobacillus nakayamae
NCBI taxonomy Id: 269670
Other names: ATCC 700379, CCUG 41660, CIP 105319, DSM 11696, JCM 3514, LMG 18787, LMG:18787, NBRC 101526, S. nakayamae, strain M-114
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