STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFG23860.1ABC-2 type transport system permease protein. (318 aa)    
Predicted Functional Partners:
SFG23880.1
ABC-2 type transport system ATP-binding protein.
 0.983
SFG23902.1
ABC-2 type transport system ATP-binding protein.
  
 0.944
SFG23927.1
GntR family transcriptional regulator.
  
  
 0.824
SFG23963.1
Hypothetical protein.
  
    0.711
SFG91384.1
Gas vesicle protein.
  
     0.641
SFF93888.1
ABC-2 type transport system ATP-binding protein.
  
 0.624
SFF94610.1
ABC-2 type transport system ATP-binding protein.
  
 0.623
SFG17587.1
Iron complex transport system ATP-binding protein.
  
 0.623
SFG27382.1
ABC-2 type transport system ATP-binding protein.
  
 0.623
SFG31664.1
ABC-2 type transport system ATP-binding protein.
  
 0.623
Your Current Organism:
Sporolactobacillus nakayamae
NCBI taxonomy Id: 269670
Other names: ATCC 700379, CCUG 41660, CIP 105319, DSM 11696, JCM 3514, LMG 18787, LMG:18787, NBRC 101526, S. nakayamae, strain M-114
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.