STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
whiAHypothetical protein; Involved in cell division and chromosome segregation. (310 aa)    
Predicted Functional Partners:
SFG51930.1
Conserved hypothetical protein, cofD-related; Required for morphogenesis under gluconeogenic growth conditions; Belongs to the gluconeogenesis factor family.
 
  
 0.955
SFG51902.1
UPF0042 nucleotide-binding protein; Displays ATPase and GTPase activities.
  
 0.919
SFG02136.1
Hypothetical protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein.
  
  
 0.760
SFG52021.1
Catabolite repression HPr-like protein.
  
  
 0.697
SFG88920.1
Uncharacterized conserved protein YloU, alkaline shock protein (Asp23) family.
  
     0.647
SFG02401.1
Serine/threonine protein kinase.
 
   
 0.646
SFG02321.1
Uncharacterized conserved protein YloU, alkaline shock protein (Asp23) family.
  
     0.634
SFG07265.1
Uncharacterized protein, UPF0297 family; Belongs to the UPF0297 family.
  
     0.614
polC
DNA polymerase-3 subunit alpha; Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity.
  
     0.572
SFG08899.1
tRNA (adenine22-N1)-methyltransferase.
  
     0.567
Your Current Organism:
Sporolactobacillus nakayamae
NCBI taxonomy Id: 269670
Other names: ATCC 700379, CCUG 41660, CIP 105319, DSM 11696, JCM 3514, LMG 18787, LMG:18787, NBRC 101526, S. nakayamae, strain M-114
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.