STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFG68093.1ABC-2 type transport system permease protein. (380 aa)    
Predicted Functional Partners:
SFG68118.1
ABC-2 type transport system ATP-binding protein.
 
  0.954
SFG68073.1
ABC-2 type transport system permease protein.
 
     0.952
SFG68142.1
Signal transduction histidine kinase.
 
    0.884
SFG68163.1
Two component transcriptional regulator, LuxR family.
 
     0.845
SFG60975.1
ABC-2 type transport system permease protein.
  
     0.541
SFG27812.1
Protein of unknown function.
  
     0.517
SFG27906.1
Protein CcmA, bactofilin family.
  
     0.500
SFG27837.1
Hypothetical protein.
  
     0.479
SFG05439.1
Integral membrane protein TIGR01906.
  
     0.457
SFG99440.1
Hypothetical protein.
   
  
 0.449
Your Current Organism:
Sporolactobacillus nakayamae
NCBI taxonomy Id: 269670
Other names: ATCC 700379, CCUG 41660, CIP 105319, DSM 11696, JCM 3514, LMG 18787, LMG:18787, NBRC 101526, S. nakayamae, strain M-114
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.