STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFG75927.1Transcriptional antiterminator. (636 aa)    
Predicted Functional Partners:
SFG75862.1
PTS system IIB component, Gat family (TC 4.A.5).
 
 
  0.930
SFG75886.1
PTS system, galactitol-specific IIC component.
 
 
  0.924
SFG75906.1
PTS system IIA component, Gat family (TC 4.A.5).
 
     0.906
SFG75837.1
Thiamin phosphate synthase YjbQ, UPF0047 family.
 
     0.866
SFG32224.1
PTS system, mannitol-specific IIC component.
 
 
 0.829
SFG78675.1
Transcriptional antiterminator.
 
 
0.806
SFG75822.1
D-arabinose 5-phosphate isomerase GutQ.
 
     0.779
mtlD
Mannitol-1-phosphate 5-dehydrogenase.
 
 
 0.773
SFG75782.1
6-phospho-3-hexuloisomerase.
 
    0.755
SFG75800.1
Ribulose-phosphate 3-epimerase.
  
  
 0.678
Your Current Organism:
Sporolactobacillus nakayamae
NCBI taxonomy Id: 269670
Other names: ATCC 700379, CCUG 41660, CIP 105319, DSM 11696, JCM 3514, LMG 18787, LMG:18787, NBRC 101526, S. nakayamae, strain M-114
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