STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFG76025.1Site-specific recombinase XerD; Belongs to the 'phage' integrase family. (311 aa)    
Predicted Functional Partners:
SFG75990.1
Site-specific recombinase XerD.
 
     0.946
SFG75969.1
Site-specific recombinase XerD; Belongs to the 'phage' integrase family.
 
    
0.840
SFG68053.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
  0.829
SFG68922.1
Site-specific recombinase XerD; Belongs to the 'phage' integrase family.
  
     0.773
mfd
Transcription-repair coupling factor (superfamily II helicase); Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site; In the C-terminal section; belongs to the helicase family. RecG subfamily.
  
   
 0.525
SFG75947.1
IS66 C-terminal element.
       0.517
SFG73081.1
Competence protein ComFC.
   
    0.461
SFG42616.1
DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family; Belongs to the FtsK/SpoIIIE/SftA family.
  
   
 0.447
SFG00409.1
DNA segregation ATPase FtsK/SpoIIIE, S-DNA-T family; Belongs to the FtsK/SpoIIIE/SftA family.
  
   
 0.434
Your Current Organism:
Sporolactobacillus nakayamae
NCBI taxonomy Id: 269670
Other names: ATCC 700379, CCUG 41660, CIP 105319, DSM 11696, JCM 3514, LMG 18787, LMG:18787, NBRC 101526, S. nakayamae, strain M-114
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.