STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFG79056.1GntR family transcriptional regulator, frlABCD operon transcriptional regulator. (244 aa)    
Predicted Functional Partners:
SFG68053.1
Pyruvate-ferredoxin/flavodoxin oxidoreductase.
    
  0.827
SFG56383.1
FCD domain-containing protein.
  
    0.766
SFG52541.1
GntR family transcriptional regulator, trehalose operon transcriptional repressor.
  
     0.761
SFG79076.1
Sugar or nucleoside kinase, ribokinase family.
 
  
 0.739
SFG79032.1
Fructoselysine-6-P-deglycase FrlB with duplicated sugar isomerase (SIS) domain; Catalyzes the conversion of a range of fructosamine 6- phosphates to glucose 6-phosphate and a free amino acid.
 
  
 0.580
SFG16243.1
Transcriptional regulator, AraC family.
   
  
 0.481
SFG92142.1
AraC-type DNA-binding protein.
   
  
 0.481
SFG14252.1
Transcriptional regulator, XRE family with cupin sensor.
  
  
 0.448
SFG23603.1
PTS system, beta-glucosides-specific IIC component.
  
  
 0.442
SFG85061.1
PTS system, glucose subfamily, IIA component.
  
  
 0.442
Your Current Organism:
Sporolactobacillus nakayamae
NCBI taxonomy Id: 269670
Other names: ATCC 700379, CCUG 41660, CIP 105319, DSM 11696, JCM 3514, LMG 18787, LMG:18787, NBRC 101526, S. nakayamae, strain M-114
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