STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SFG85555.1Hypothetical protein. (544 aa)    
Predicted Functional Partners:
SFG85543.1
ABC-2 type transport system ATP-binding protein.
 
     0.950
SFG85574.1
Hypothetical protein.
       0.661
SFG85594.1
Hypothetical protein.
       0.652
SFG83267.1
Hypothetical protein.
  
     0.630
SFG88167.1
Hypothetical protein.
  
     0.607
SFG73182.1
FlgN protein.
  
     0.541
SFG33800.1
Spore photoproduct lyase.
  
     0.490
SFG54064.1
YpjP-like protein.
  
     0.428
SFG23641.1
Hypothetical protein.
  
     0.412
SFG33222.1
Ribosomal-protein-alanine N-acetyltransferase.
  
     0.407
Your Current Organism:
Sporolactobacillus nakayamae
NCBI taxonomy Id: 269670
Other names: ATCC 700379, CCUG 41660, CIP 105319, DSM 11696, JCM 3514, LMG 18787, LMG:18787, NBRC 101526, S. nakayamae, strain M-114
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.