Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| Rru_A0009 | Rru_A0010 | Rru_A0009 | Rru_A0010 | PTS IIA-like nitrogen-regulatory protein PtsN. | Sigma-54 (RpoN); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.826 |
| Rru_A0009 | Rru_A0011 | Rru_A0009 | Rru_A0011 | PTS IIA-like nitrogen-regulatory protein PtsN. | ABC transporter component. | 0.541 |
| Rru_A0009 | Rru_A0012 | Rru_A0009 | Rru_A0012 | PTS IIA-like nitrogen-regulatory protein PtsN. | Hypothetical protein. | 0.548 |
| Rru_A0010 | Rru_A0009 | Rru_A0010 | Rru_A0009 | Sigma-54 (RpoN); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | PTS IIA-like nitrogen-regulatory protein PtsN. | 0.826 |
| Rru_A0010 | Rru_A0011 | Rru_A0010 | Rru_A0011 | Sigma-54 (RpoN); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | ABC transporter component. | 0.898 |
| Rru_A0010 | Rru_A0012 | Rru_A0010 | Rru_A0012 | Sigma-54 (RpoN); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Hypothetical protein. | 0.848 |
| Rru_A0010 | Rru_A0326 | Rru_A0010 | Rru_A0326 | Sigma-54 (RpoN); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Transcriptional regulator, NifA subfamily, Fis family. | 0.856 |
| Rru_A0010 | Rru_A0993 | Rru_A0010 | Rru_A0993 | Sigma-54 (RpoN); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Transcriptional regulator, NifA, Fis family. | 0.854 |
| Rru_A0010 | Rru_A1388 | Rru_A0010 | Rru_A1388 | Sigma-54 (RpoN); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | Transcriptional regulator, NifA subfamily, Fis family. | 0.854 |
| Rru_A0010 | rpoA | Rru_A0010 | Rru_A2664 | Sigma-54 (RpoN); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase, alpha subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.947 |
| Rru_A0010 | rpoB | Rru_A0010 | Rru_A2695 | Sigma-54 (RpoN); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.935 |
| Rru_A0010 | rpoC | Rru_A0010 | Rru_A2694 | Sigma-54 (RpoN); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | DNA-directed RNA polymerase; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.934 |
| Rru_A0010 | rpoZ | Rru_A0010 | Rru_A1857 | Sigma-54 (RpoN); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | RNA polymerase, omega subunit; Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits. | 0.915 |
| Rru_A0011 | Rru_A0009 | Rru_A0011 | Rru_A0009 | ABC transporter component. | PTS IIA-like nitrogen-regulatory protein PtsN. | 0.541 |
| Rru_A0011 | Rru_A0010 | Rru_A0011 | Rru_A0010 | ABC transporter component. | Sigma-54 (RpoN); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.898 |
| Rru_A0011 | Rru_A0012 | Rru_A0011 | Rru_A0012 | ABC transporter component. | Hypothetical protein. | 0.982 |
| Rru_A0012 | Rru_A0009 | Rru_A0012 | Rru_A0009 | Hypothetical protein. | PTS IIA-like nitrogen-regulatory protein PtsN. | 0.548 |
| Rru_A0012 | Rru_A0010 | Rru_A0012 | Rru_A0010 | Hypothetical protein. | Sigma-54 (RpoN); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.848 |
| Rru_A0012 | Rru_A0011 | Rru_A0012 | Rru_A0011 | Hypothetical protein. | ABC transporter component. | 0.982 |
| Rru_A0326 | Rru_A0010 | Rru_A0326 | Rru_A0010 | Transcriptional regulator, NifA subfamily, Fis family. | Sigma-54 (RpoN); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. | 0.856 |
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