STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rru_A0062Terpene synthase, squalene cyclase. (656 aa)    
Predicted Functional Partners:
Rru_A0060
Radical SAM.
   
 0.927
Rru_A0061
Purine and other phosphorylases, family 1.
 
     0.921
Rru_A0064
Squalene-phytoene synthase.
 
  
 0.920
Rru_A0063
Amine oxidase.
 
   
 0.914
Rru_A0065
Squalene/phytoene synthase.
 
  
 0.896
Rru_A0058
Dihydrokaempferol 4-reductase.
 
 
 0.880
Rru_A0057
Conserved hypothetical protein.
 
     0.797
Rru_A0056
Toluene tolerance.
 
     0.631
Rru_A0494
Phytoene synthase.
 
  
 0.613
ubiL
Ubiquinone hydroxylase UbiL; Catalyzes the hydroxylation of two positions of the aromatic ring during ubiquinone biosynthesis; Belongs to the UbiH/COQ6 family.
   
  
 0.507
Your Current Organism:
Rhodospirillum rubrum
NCBI taxonomy Id: 269796
Other names: R. rubrum ATCC 11170, Rhodospirillum rubrum ATCC 11170, Rhodospirillum rubrum S1, Rhodospirillum rubrum str. ATCC 11170, Rhodospirillum rubrum strain ATCC 11170
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