STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Rru_A0065Squalene/phytoene synthase. (297 aa)    
Predicted Functional Partners:
Rru_A0063
Amine oxidase.
 
  
 0.966
Rru_A0062
Terpene synthase, squalene cyclase.
 
  
 0.896
Rru_A0064
Squalene-phytoene synthase.
    
0.860
Rru_A0493
Phytoene desaturase.
 
  
 0.804
Rru_A2984
CrtD protein.
 
  
 0.798
Rru_A0061
Purine and other phosphorylases, family 1.
 
     0.729
Rru_A0494
Phytoene synthase.
   
0.708
Rru_A0222
Glyceraldehyde-3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family.
   
  
 0.654
Rru_A0060
Radical SAM.
 
   
 0.653
Rru_A3432
Hypothetical protein.
    
 0.651
Your Current Organism:
Rhodospirillum rubrum
NCBI taxonomy Id: 269796
Other names: R. rubrum ATCC 11170, Rhodospirillum rubrum ATCC 11170, Rhodospirillum rubrum S1, Rhodospirillum rubrum str. ATCC 11170, Rhodospirillum rubrum strain ATCC 11170
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